refactor: modernize code quality tooling with Ruff

- Replace black, isort, and flake8 with Ruff (all-in-one linter and formatter)
- Add comprehensive pyproject.toml configuration
- Simplify Makefile code quality targets
- Configure exclusions for venv/.venv in pyproject.toml
- Auto-fix 1,359 linting issues across codebase

Benefits:
- Much faster builds (Ruff is written in Rust)
- Single tool replaces multiple tools
- More comprehensive rule set (UP, B, C4, SIM, PIE, RET, Q)
- All configuration centralized in pyproject.toml
- Better import sorting and formatting consistency

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

middleware/logging.py

@@ -9,7 +9,7 @@ This module provides classes and functions for:
 
 import logging
 import time
-from typing import Callable
+from collections.abc import Callable
 
 from fastapi import Request, Response
 from starlette.middleware.base import BaseHTTPMiddleware